anndataR: AnnData interoperability in R

Bring the power and flexibility of AnnData to the R ecosystem, allowing you to effortlessly manipulate and analyse your single-cell data. This package lets you work with backed h5ad and zarr files, directly access various slots (e.g. X, obs, var), or convert the data into SingleCellExperiment and Seurat objects.

See also

Useful links:

• https://anndataR.scverse.org/

• https://github.com/scverse/anndataR

• Report bugs at https://github.com/scverse/anndataR/issues

Author

Maintainer: Robrecht Cannoodt [email protected] (ORCID) (rcannood)

Authors:

• Luke Zappia [email protected] (ORCID) (lazappi)

• Martin Morgan [email protected] (ORCID) (mtmorgan)

• Louise Deconinck [email protected] (ORCID) (LouiseDck)

Other contributors:

• Danila Bredikhin [email protected] (ORCID) (gtca) [contributor]

• Isaac Virshup (ORCID) (ivirshup) [contributor]

• Brian Schilder [email protected] (ORCID) (bschilder) [contributor]

• Chananchida Sang-aram (ORCID) (csangara) [contributor]

• Data Intuitive [email protected] [funder]

• Chan Zuckerberg Initiative [funder]

• scverse consortium [sponsor]